Commits · 222f3972c6131e43efac12831a97bbc56acdcf63 · SOaAS / psot.repository · GitLab

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Mar 08, 2017
- Added a database configuration parameter to the blast wrapper. Renamed the files. · 222f3972
  Lukas Jelonek authored 8 years ago
  
  222f3972
- Added default configuration for modules and rewrote the profiles collection · 82e52112
  Lukas Jelonek authored 8 years ago
  
  82e52112
Feb 28, 2017
- Renamed identifiers of example data · e3fece82
  Lukas Jelonek authored 8 years ago
  
  e3fece82
- Removed unneeded nextflow script · d47939ae
  Lukas Jelonek authored 8 years ago
  
  d47939ae
- Refactored nextflow code generation and execution into module. Implemented postprocessing · ab785538
  Lukas Jelonek authored 8 years ago
  
  ab785538
- Fixed bug: wrong test. Added verbosity · 326b3e1d
  Lukas Jelonek authored 8 years ago
  
  326b3e1d
- Added scripts to merge and split json documents · 2d7a73c7
  Lukas Jelonek authored 8 years ago
  
  2d7a73c7
- Added support for parameters · eb487842
  Lukas Jelonek authored 8 years ago
  
  eb487842
Feb 27, 2017
- Implemented nextflow script generation and execution · 23f7e3bd
  Lukas Jelonek authored 8 years ago
  
  23f7e3bd
- Moved app config to own branch 'app' · 54e269f0
  Lukas Jelonek authored 8 years ago
  
  54e269f0
- Added --output option to analysis scripts · 5bf47604
  Lukas Jelonek authored 8 years ago
  
  5bf47604
- Removed relative path in config · 43fe9e23
  Lukas Jelonek authored 8 years ago
  
  43fe9e23
- Added --result and --output options to json converter scripts · 15f4a749
  Lukas Jelonek authored 8 years ago
  
  15f4a749
- Added paths to config dictionary · 9945d113
  Lukas Jelonek authored 8 years ago
  
  9945d113
Feb 23, 2017
- [WIP] nextflow script generation · 176b0270
  Lukas Jelonek authored 8 years ago
  
  176b0270
- Added subparsers for analysis and info actions · 6578edd8
  Lukas Jelonek authored 8 years ago
  
  6578edd8
- Added profile definitions · 0d7c6137
  Lukas Jelonek authored 8 years ago
  
  0d7c6137
- Added module manifests · 511becad
  Lukas Jelonek authored 8 years ago
  
  511becad
- Added config module and used it in the module scripts · 349eb1e7
  Lukas Jelonek authored 8 years ago
  
  349eb1e7
Feb 22, 2017
- Added nextflow driver script that runs signalp and blast · 8a98d304
  Lukas Jelonek authored 8 years ago
  
  8a98d304
- Adapted blast json document to the signalp document structure · ded79224
  Lukas Jelonek authored 8 years ago
  
  ded79224
- Removed debugging output · 184e0d46
  Lukas Jelonek authored 8 years ago
  
  184e0d46
- Added blast vs swissprot tool and converter · ca4ffd6a
  Lukas Jelonek authored 8 years ago
  
  ca4ffd6a
- Changed convention for converters. script prefix is now convert · b8878d71
  Lukas Jelonek authored 8 years ago
  
  b8878d71
- Added configuration file for the whole system · d47a4529
  Lukas Jelonek authored 8 years ago
  
  d47a4529
Feb 14, 2017
- Added signalp module · a6cb14bf
  Lukas Jelonek authored 8 years ago
  
  a6cb14bf
- Added example data · 7f09a528
  Lukas Jelonek authored 8 years ago
  
  7f09a528
- Added readme · 4dcde2a9
  Lukas Jelonek authored 8 years ago
  
  4dcde2a9