Commits · 6a80c032c104f16c05677a460b86a7f3ac7495d2 · SOaAS / psot.repository · GitLab

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Dec 01, 2017
- Implement simple storage of query sequence names. Currently relies on resolution of issue #22. · 6a80c032
  hmueller authored 7 years ago
  
  6a80c032
Nov 30, 2017
- Merge branch 'targetp' into 'develop' · f67b0373
  Lukas Jelonek authored 7 years ago
  
  Targetp See merge request psot!1
  f67b0373
- Merge branch 'develop' into targetp · 6c59cd12
  Lukas Jelonek authored 7 years ago
  
  6c59cd12
- Cleanup code · 8dbbeca4
  Lukas Jelonek authored 7 years ago
  
  8dbbeca4
- fixed tmhmm json format · ec72c85d
  lmueller authored 7 years ago and Lukas Jelonek committed 7 years ago
  
  ec72c85d
- Merge commit '9db2c064 ' into develop · c040c5fd
  Lukas Jelonek authored 7 years ago
  
  c040c5fd
- Translate location identifiers into more verbose representations. · 6a22244c
  hmueller authored 7 years ago
  
  6a22244c
- Reduce code redundancy. · 1c531d81
  hmueller authored 7 years ago
  
  1c531d81
Nov 28, 2017
- Add targetp module to complete and debug profile. · b5762dd7
  hmueller authored 7 years ago
  
  b5762dd7
- Use string type organism_mode instead of boolean plantmode parameter. · df258571
  hmueller authored 7 years ago
  
  df258571
- Change organism type parameter from boolean to string type. · e2a4af22
  hmueller authored 7 years ago
  
  e2a4af22
- Add targetp to supported tools. · 8b8267bd
  hmueller authored 7 years ago
  
  8b8267bd
- Add TargetP to json converter. · 29590252
  hmueller authored 7 years ago
  
  29590252
Nov 27, 2017
- Add targetp module. · 3c3f0eb1
  hmueller authored 7 years ago
  
  3c3f0eb1
- Add run_targetp.py script. · 193e2cef
  hmueller authored 7 years ago
  
  193e2cef
- Add targetp path to config.yaml. · 51c09db6
  hmueller authored 7 years ago
  
  51c09db6
Nov 21, 2017
- Update changelog · 535a948c
  Lukas Jelonek authored 7 years ago
  
  535a948c
- Replace drmaa with SGE · 301d74c2
  Lukas Jelonek authored 7 years ago
  
  301d74c2
Nov 13, 2017
- added tmhmm to list of required tools in installation doc · 9db2c064
  lmueller authored 7 years ago
  
  9db2c064
Nov 09, 2017
- fixed bug in topology-string resolver · e17691d6
  lmueller authored 7 years ago
  
  e17691d6
- Merge branch 'tmhmm' of git.computational.bio.uni-giessen.de:SOaAS/psot into tmhmm · 4f2302e3
  lmueller authored 7 years ago
  
  4f2302e3
Nov 08, 2017
- added method to resolve topology-string from tmhmm output · f08f7db6
  lmueller authored 7 years ago
  
  f08f7db6
Oct 26, 2017
- Add tmhmm to fast profile · 8626d4b9
  Lukas Jelonek authored 7 years ago
  
  8626d4b9
- Update PFAM · d9b2d590
  Lukas Jelonek authored 7 years ago
  
  d9b2d590
Oct 18, 2017
- added tmhmm module · 202ab9c1
  lmueller authored 7 years ago
  
  202ab9c1
Aug 10, 2017
- Set java drmaa lib before running nextflow · ecf65900
  Lukas Jelonek authored 7 years ago
  
  ecf65900
- Add --use_cluster flag to CLI and pass it to the nextflow executor · 13a05b98
  Lukas Jelonek authored 7 years ago
  
  13a05b98
- Set /vol/sge-tmp as temporary folder · 7aeb1be9
  Lukas Jelonek authored 7 years ago
  
  7aeb1be9
- Add chunkprocessing via drmaa · 6dbf885c
  Lukas Jelonek authored 7 years ago
  
  6dbf885c
Aug 07, 2017
- Removed threads from blast runner · 8487d7da
  Lukas Jelonek authored 7 years ago
  
  8487d7da
- Fix bug: ghostx adds the whole fasta header as a query to its results · 395eb134
  Lukas Jelonek authored 7 years ago
  
  395eb134
Aug 02, 2017
- Use env import instead of changing the module search path by hand in run scripts · 4be6ffd5
  Lukas Jelonek authored 7 years ago
  
  4be6ffd5
Aug 01, 2017
- Extract profiles from config.yaml into own directory · 2e198433
  Lukas Jelonek authored 7 years ago
  
  2e198433
- Add debuging profile that executes all currently existing modules · 80842e5d
  Lukas Jelonek authored 7 years ago
  
  80842e5d
- Restructure project to not mix packages, scripts and executables (Fixes #21) · d8983f62
  Lukas Jelonek authored 7 years ago
  
  d8983f62
Jul 31, 2017
- Add installation section to documentation · 068a357a
  Lukas Jelonek authored 7 years ago
  
  068a357a
- Add dbxref to ghostx converter. Adapt to blastp and hmmscan json format (Fixes #19) · c48bce70
  Lukas Jelonek authored 7 years ago
  
  c48bce70
- hmmscan converter now uses dbxref instead of accessions (fixes #18) · 152c2c54
  Lukas Jelonek authored 7 years ago
  
  152c2c54
Jul 27, 2017
- Fix bug: Help is not shown when running without any subcommand · c921b071
  Lukas Jelonek authored 7 years ago
  
  c921b071
Jul 26, 2017
- Add chapter on concepts · 9139aefe
  Lukas Jelonek authored 7 years ago
  
  9139aefe