Commits · ad087cc8eb98e09e51d31e44c9a69c23af987ce9 · SOaAS / psot.repository

Dec 07, 2017
- Define enumerated header filename in run scripts and pass it to header... · ad087cc8
  hmueller authored 7 years ago
  
  Define enumerated header filename in run scripts and pass it to header enumeration script instead of passing result directory.
  ad087cc8
- Minor improvements in code readability. · 610ed0d9
  hmueller authored 7 years ago
  
  610ed0d9
- Add targetp to list of required tools. · 88914353
  hmueller authored 7 years ago
  
  88914353
- Include fasta header conversion and restoration steps in targetp module scripts. · 61c16030
  hmueller authored 7 years ago
  
  61c16030
- Remove redundant sequence id field from results section of targetp in json output. · a2f733d3
  hmueller authored 7 years ago
  
  a2f733d3
- Pass directory instead of file between targetp run and convert processes. · 7b15f5e7
  hmueller authored 7 years ago
  
  7b15f5e7
Dec 06, 2017
- Minor code cleanup. · 6ddf8881
  hmueller authored 7 years ago
  
  6ddf8881
- Include fasta header conversion and restoration steps in ghostx module scripts. · 6f1bf564
  hmueller authored 7 years ago
  
  6f1bf564
Dec 05, 2017
- Add script to restore original seq ids in json results file from enumeration. · 05fd6a68
  hmueller authored 7 years ago
  
  05fd6a68
- Change filename and manipulate file in place instead of creating a new one. · 045ac89e
  hmueller authored 7 years ago
  
  045ac89e
- Add script for exchange of fasta headers with enumeration. · 42345e6a
  hmueller authored 7 years ago
  
  42345e6a
Nov 30, 2017
- Merge branch 'targetp' into 'develop' · f67b0373
  Lukas Jelonek authored 7 years ago
  
  Targetp See merge request psot!1
  f67b0373
- Merge branch 'develop' into targetp · 6c59cd12
  Lukas Jelonek authored 7 years ago
  
  6c59cd12
- Cleanup code · 8dbbeca4
  Lukas Jelonek authored 7 years ago
  
  8dbbeca4
- fixed tmhmm json format · ec72c85d
  lmueller authored 7 years ago and Lukas Jelonek committed 7 years ago
  
  ec72c85d
- Merge commit '9db2c064 ' into develop · c040c5fd
  Lukas Jelonek authored 7 years ago
  
  c040c5fd
- Translate location identifiers into more verbose representations. · 6a22244c
  hmueller authored 7 years ago
  
  6a22244c
- Reduce code redundancy. · 1c531d81
  hmueller authored 7 years ago
  
  1c531d81
Nov 28, 2017
- Add targetp module to complete and debug profile. · b5762dd7
  hmueller authored 7 years ago
  
  b5762dd7
- Use string type organism_mode instead of boolean plantmode parameter. · df258571
  hmueller authored 7 years ago
  
  df258571
- Change organism type parameter from boolean to string type. · e2a4af22
  hmueller authored 7 years ago
  
  e2a4af22
- Add targetp to supported tools. · 8b8267bd
  hmueller authored 7 years ago
  
  8b8267bd
- Add TargetP to json converter. · 29590252
  hmueller authored 7 years ago
  
  29590252
Nov 27, 2017
- Add targetp module. · 3c3f0eb1
  hmueller authored 7 years ago
  
  3c3f0eb1
- Add run_targetp.py script. · 193e2cef
  hmueller authored 7 years ago
  
  193e2cef
- Add targetp path to config.yaml. · 51c09db6
  hmueller authored 7 years ago
  
  51c09db6
Nov 21, 2017
- Update changelog · 535a948c
  Lukas Jelonek authored 7 years ago
  
  535a948c
- Replace drmaa with SGE · 301d74c2
  Lukas Jelonek authored 7 years ago
  
  301d74c2
Nov 13, 2017
- added tmhmm to list of required tools in installation doc · 9db2c064
  lmueller authored 7 years ago
  
  9db2c064
Nov 09, 2017
- fixed bug in topology-string resolver · e17691d6
  lmueller authored 7 years ago
  
  e17691d6
- Merge branch 'tmhmm' of git.computational.bio.uni-giessen.de:SOaAS/psot into tmhmm · 4f2302e3
  lmueller authored 7 years ago
  
  4f2302e3
Nov 08, 2017
- added method to resolve topology-string from tmhmm output · f08f7db6
  lmueller authored 7 years ago
  
  f08f7db6
Oct 26, 2017
- Add tmhmm to fast profile · 8626d4b9
  Lukas Jelonek authored 7 years ago
  
  8626d4b9
- Update PFAM · d9b2d590
  Lukas Jelonek authored 7 years ago
  
  d9b2d590
Oct 18, 2017
- added tmhmm module · 202ab9c1
  lmueller authored 7 years ago
  
  202ab9c1
Aug 10, 2017
- Set java drmaa lib before running nextflow · ecf65900
  Lukas Jelonek authored 7 years ago
  
  ecf65900
- Add --use_cluster flag to CLI and pass it to the nextflow executor · 13a05b98
  Lukas Jelonek authored 7 years ago
  
  13a05b98
- Set /vol/sge-tmp as temporary folder · 7aeb1be9
  Lukas Jelonek authored 7 years ago
  
  7aeb1be9
- Add chunkprocessing via drmaa · 6dbf885c
  Lukas Jelonek authored 7 years ago
  
  6dbf885c
Aug 07, 2017
- Removed threads from blast runner · 8487d7da
  Lukas Jelonek authored 7 years ago
  
  8487d7da