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# Module manifest for the blastp against swissprot analysis
# The name of the module. Is needed for the list-analyses option, for custom
# configurations and custom profiles
name: 'hmmer_pfam_a'
# Short description of the analysis
info: 'hmmscan analysis against PFAM-A'
# The name of the script for the analysis step. Must take a --fasta parameter
Lukas Jelonek
committed
analysis:
script: 'run_hmmer.py'
parameters:
database: '/pfam/Pfam-A.hmm'
Lukas Jelonek
committed
evalue: 1e-10
container:
docker: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
singularity: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
# The name of the result to json converter script. Must take one parameter, the
# result file from the analysis_script
Lukas Jelonek
committed
converter:
script: 'convert_hmmer.py'
parameters:
dbxref: 'PFAM'