hmmer_vs_PFAM-A.yaml

# Module manifest for the blastp against swissprot analysis

# The name of the module. Is needed for the list-analyses option, for custom
# configurations and custom profiles
name: 'hmmer_pfam_a'

# Short description of the analysis
info: 'hmmscan analysis against PFAM-A'

# The name of the script for the analysis step. Must take a --fasta parameter
analysis:
    script: 'run_hmmer.py'
    parameters:
        database: '/pfam/Pfam-A.hmm'
        evalue: 1e-10
    execution:
        cluster:
            chunksize: 200
    container:
        docker: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'
        singularity: 'biocontainers/hmmer:v3.1b2dfsg-5-deb_cv1'

# The name of the result to json converter script. Must take one parameter, the
# result file from the analysis_script
converter:
    script: 'convert_hmmer.py'
    parameters:
        dbxref: 'PFAM'