Commits · ad087cc8eb98e09e51d31e44c9a69c23af987ce9 · SOaAS / psot.repository · GitLab

Snippets Groups Projects

Dec 07, 2017
- Define enumerated header filename in run scripts and pass it to header... · ad087cc8
  hmueller authored Dec 7, 2017
  ad087cc8
- Minor improvements in code readability. · 610ed0d9
  hmueller authored Dec 7, 2017
  
  610ed0d9
- Include fasta header conversion and restoration steps in targetp module scripts. · 61c16030
  hmueller authored Dec 7, 2017
  
  61c16030
- Remove redundant sequence id field from results section of targetp in json output. · a2f733d3
  hmueller authored Dec 7, 2017
  
  a2f733d3
- Pass directory instead of file between targetp run and convert processes. · 7b15f5e7
  hmueller authored Dec 7, 2017
  
  7b15f5e7
Dec 06, 2017
- Minor code cleanup. · 6ddf8881
  hmueller authored Dec 6, 2017
  
  6ddf8881
- Include fasta header conversion and restoration steps in ghostx module scripts. · 6f1bf564
  hmueller authored Dec 6, 2017
  
  6f1bf564
Dec 05, 2017
- Add script to restore original seq ids in json results file from enumeration. · 05fd6a68
  hmueller authored Dec 5, 2017
  
  05fd6a68
- Change filename and manipulate file in place instead of creating a new one. · 045ac89e
  hmueller authored Dec 5, 2017
  
  045ac89e
- Add script for exchange of fasta headers with enumeration. · 42345e6a
  hmueller authored Dec 5, 2017
  
  42345e6a
Nov 30, 2017
- Cleanup code · 8dbbeca4
  Lukas Jelonek authored Nov 30, 2017
  
  8dbbeca4
- fixed tmhmm json format · ec72c85d
  lmueller authored Nov 30, 2017 and Lukas Jelonek committed Nov 30, 2017
  
  ec72c85d
- Translate location identifiers into more verbose representations. · 6a22244c
  hmueller authored Nov 30, 2017
  
  6a22244c
- Reduce code redundancy. · 1c531d81
  hmueller authored Nov 30, 2017
  
  1c531d81
Nov 28, 2017
- Use string type organism_mode instead of boolean plantmode parameter. · df258571
  hmueller authored Nov 28, 2017
  
  df258571
- Change organism type parameter from boolean to string type. · e2a4af22
  hmueller authored Nov 28, 2017
  
  e2a4af22
- Add TargetP to json converter. · 29590252
  hmueller authored Nov 28, 2017
  
  29590252
Nov 27, 2017
- Add run_targetp.py script. · 193e2cef
  hmueller authored Nov 27, 2017
  
  193e2cef
Nov 09, 2017
- fixed bug in topology-string resolver · e17691d6
  lmueller authored Nov 9, 2017
  
  e17691d6
Nov 08, 2017
- added method to resolve topology-string from tmhmm output · f08f7db6
  lmueller authored Nov 8, 2017
  
  f08f7db6
Oct 18, 2017
- added tmhmm module · 202ab9c1
  lmueller authored Oct 18, 2017
  
  202ab9c1
Aug 07, 2017
- Removed threads from blast runner · 8487d7da
  Lukas Jelonek authored Aug 7, 2017
  
  8487d7da
- Fix bug: ghostx adds the whole fasta header as a query to its results · 395eb134
  Lukas Jelonek authored Aug 7, 2017
  
  395eb134
Aug 02, 2017
- Use env import instead of changing the module search path by hand in run scripts · 4be6ffd5
  Lukas Jelonek authored Aug 2, 2017
  
  4be6ffd5
Aug 01, 2017
- Restructure project to not mix packages, scripts and executables (Fixes #21) · d8983f62
  Lukas Jelonek authored Aug 1, 2017
  
  d8983f62