Commits · 00b599a0140f4e756f0e2132e3e26560a3feb5b6 · SOaAS / psot.repository · GitLab

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Feb 12, 2019
- add "docker" AND "singularity" properties in module configs; config.py reads... · 00b599a0
  Marc authored 6 years ago
  
  add "docker" AND "singularity" properties in module configs; config.py reads named options correctly
  00b599a0
- add dockerfiles to repository · 368d2f70
  Marc authored 6 years ago
  
  368d2f70
- add "docker" and "singularity" programm arguments to psot; extend scripts and... · 9c99ece0
  Marc authored 6 years ago
  
  add "docker" and "singularity" programm arguments to psot; extend scripts and config files for blastp, ghostx and hmmer
  9c99ece0
Feb 10, 2019
- default_repo is now loaded as default repository at programm start · c344cdf1
  Marc authored 6 years ago
  
  c344cdf1
- bug fixed: nextflow.config now also correct if processes are not started in virtual environment · d222fc30
  Marc authored 6 years ago
  
  d222fc30
Feb 09, 2019
- include 'executor', 'clusterOptions' and 'beforeScript' properties in nextflow.config generation · 08bdbb12
  Marc authored 6 years ago
  
  08bdbb12
- run scripts can now "look up" if they were started inside of the container · e7854eff
  Marc authored 6 years ago
  
  e7854eff
Feb 08, 2019
- netxflow.py generates a nextflow.config file now; add container element in... · 4d48a8a1
  Marc authored 6 years ago
  
  netxflow.py generates a nextflow.config file now; add container element in some modules in the default_repo
  4d48a8a1
Jan 07, 2019
- Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/psot into develop · 5f2bbc99
  Lukas Jelonek authored 6 years ago
  
  5f2bbc99
Jun 28, 2018
- Fix bug in documentation: use pip3 instead of pip · 736c3a2b
  Lukas Jelonek authored 6 years ago
  
  736c3a2b
Apr 10, 2018
- Prepare version · 3a1287e2
  Lukas Jelonek authored 6 years ago
  
  3a1287e2
- Add documentation of results structure · 0f6e1379
  Lukas Jelonek authored 6 years ago
  
  0f6e1379
- Fix bug: run_blastp ignores evalue · 9be2aa3e
  Lukas Jelonek authored 6 years ago
  
  9be2aa3e
Apr 09, 2018
- Fix bug: information cannot be retrieved when no computations are available · a736ef30
  Lukas Jelonek authored 6 years ago
  
  a736ef30
Apr 05, 2018
- Minor changes on documentation · 44edd19b
  Lukas Jelonek authored 6 years ago
  
  44edd19b
- Add documentation on inclusion of own repositories · 8f177582
  Lukas Jelonek authored 6 years ago
  
  8f177582
Apr 04, 2018
- Update documentation · 8176e9cd
  Lukas Jelonek authored 6 years ago
  
  8176e9cd
- Fix bug: Exception when no repository is available · 0c33a710
  Lukas Jelonek authored 6 years ago
  
  0c33a710
Apr 03, 2018
- Fix bug: tools is not a dictionary when not defined in config.yaml · 2e5f8186
  Lukas Jelonek authored 6 years ago
  
  2e5f8186
- Remove commandline parameter for additional repositories · b3f128d5
  Lukas Jelonek authored 6 years ago
  
  b3f128d5
- Decouple default bcf psot profiles from psot · c1aafe51
  Lukas Jelonek authored 6 years ago
  
  c1aafe51
- Move repository parameter to main parser. Improve debug output · 158711ed
  Lukas Jelonek authored 6 years ago
  
  158711ed
Mar 08, 2018
- Add envelop to hmmer output, replace blast with ghostx in common profile · 7429e324
  Lukas Jelonek authored 7 years ago
  
  7429e324
Mar 07, 2018
- Fix bug: hmmer query start and end are same or similar · 3d4c8474
  Lukas Jelonek authored 7 years ago
  
  3d4c8474
- Fix bug: convert_targetp still has problems when installed in a virtualenv · 0ef7a504
  Lukas Jelonek authored 7 years ago
  
  0ef7a504
- Fix bug: Cluster execution does not work within a virtual environment · 8c34e904
  Lukas Jelonek authored 7 years ago
  
  8c34e904
- Update documentation · 708eebeb
  Lukas Jelonek authored 7 years ago
  
  708eebeb
Feb 07, 2018
- Implement support for accessing modules from other repositories in profiles · 8b448cb6
  Lukas Jelonek authored 7 years ago
  
  8b448cb6
- Fix bug: adapt targetp runner to new helpers path · 0a11c872
  Lukas Jelonek authored 7 years ago
  
  0a11c872
- Fix bug: adapt ghostx runner to new helpers path · 4f316a5c
  Lukas Jelonek authored 7 years ago
  
  4f316a5c
- Modify tests psot-repository that it can actually be executed with psot · fce52ed3
  Lukas Jelonek authored 7 years ago
  
  fce52ed3
- Moved helper scripts to own directory. Use absolute paths for scripts. · 78d90258
  Lukas Jelonek authored 7 years ago
  
  78d90258
Jan 31, 2018
- Add user interface integration for psot repositories via cli and environment variable · 67704550
  Lukas Jelonek authored 7 years ago
  
  67704550
- Merge branch 'tool-name-in-live-results' into 'develop' · 660a0d11
  Lukas Jelonek authored 7 years ago
  
  Replace uuid in live results with tool name (resolves #20). Closes #20 See merge request psot!9
  660a0d11
- Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/psot into develop · 312d16fc
  Lukas Jelonek authored 7 years ago
  
  312d16fc
- Fix bug: retrieve information uses always the same name (fixes #45) · a7249505
  Lukas Jelonek authored 7 years ago
  
  a7249505
- Merge branch 'secure-tmpdir-removal' into 'develop' · 6c90be0e
  Lukas Jelonek authored 7 years ago
  
  Use pythons context manager to ensure temp dir removal in tests (resolves #44). Closes #44 See merge request psot!10
  6c90be0e
- Use pythons context manager to ensure temp dir removal in tests (resolves #44). · 8b138dd0
  hmueller authored 7 years ago
  
  8b138dd0
- Cleanup · 09d53eb3
  Lukas Jelonek authored 7 years ago
  
  09d53eb3
- Flatten documentation structure to a single directory · 196c6240
  Lukas Jelonek authored 7 years ago
  
  196c6240