Commits · 8b448cb6458bf372bba747490ef83206e7d0ec00 · SOaAS / psot.repository · GitLab

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Feb 07, 2018
- Implement support for accessing modules from other repositories in profiles · 8b448cb6
  Lukas Jelonek authored 7 years ago
  
  8b448cb6
- Fix bug: adapt targetp runner to new helpers path · 0a11c872
  Lukas Jelonek authored 7 years ago
  
  0a11c872
- Fix bug: adapt ghostx runner to new helpers path · 4f316a5c
  Lukas Jelonek authored 7 years ago
  
  4f316a5c
- Modify tests psot-repository that it can actually be executed with psot · fce52ed3
  Lukas Jelonek authored 7 years ago
  
  fce52ed3
- Moved helper scripts to own directory. Use absolute paths for scripts. · 78d90258
  Lukas Jelonek authored 7 years ago
  
  78d90258
Jan 31, 2018
- Add user interface integration for psot repositories via cli and environment variable · 67704550
  Lukas Jelonek authored 7 years ago
  
  67704550
- Merge branch 'tool-name-in-live-results' into 'develop' · 660a0d11
  Lukas Jelonek authored 7 years ago
  
  Replace uuid in live results with tool name (resolves #20). Closes #20 See merge request psot!9
  660a0d11
- Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/psot into develop · 312d16fc
  Lukas Jelonek authored 7 years ago
  
  312d16fc
- Fix bug: retrieve information uses always the same name (fixes #45) · a7249505
  Lukas Jelonek authored 7 years ago
  
  a7249505
- Merge branch 'secure-tmpdir-removal' into 'develop' · 6c90be0e
  Lukas Jelonek authored 7 years ago
  
  Use pythons context manager to ensure temp dir removal in tests (resolves #44). Closes #44 See merge request psot!10
  6c90be0e
- Use pythons context manager to ensure temp dir removal in tests (resolves #44). · 8b138dd0
  hmueller authored 7 years ago
  
  8b138dd0
- Cleanup · 09d53eb3
  Lukas Jelonek authored 7 years ago
  
  09d53eb3
- Flatten documentation structure to a single directory · 196c6240
  Lukas Jelonek authored 7 years ago
  
  196c6240
- Update README.rst · a32f0cea
  Lukas Jelonek authored 7 years ago
  
  a32f0cea
- Merge remote-tracking branch 'origin/develop' into tool-name-in-live-results · 048e6207
  hmueller authored 7 years ago
  
  048e6207
- Update readme · 37d1acf3
  Lukas Jelonek authored 7 years ago
  
  37d1acf3
- Implement merge of multiple psot repositories · 278b28bc
  Lukas Jelonek authored 7 years ago
  
  278b28bc
- Replace uuid in live results with tool name (resolves #20). · 044a1df9
  hmueller authored 7 years ago
  
  044a1df9
Jan 30, 2018
- Add test methods for checking whether scripts for repository are resolved correctly. · c62b52a7
  Lukas Jelonek authored 7 years ago
  
  c62b52a7
- Refactor config into repository and application config. · 6cfc2cf4
  Lukas Jelonek authored 7 years ago
  
  6cfc2cf4
Jan 29, 2018
- Fix bug: replace default fasta file with concrete fasta file · c5e97033
  Lukas Jelonek authored 7 years ago
  
  c5e97033
Jan 24, 2018
- Add feature: dbxref lookup (closes #23) · dad7e862
  Lukas Jelonek authored 7 years ago
  
  Sem-Ver: feature
  dad7e862
- Replace single document handling with dictionary documents handling for dbxref resolver · a0fdafcd
  Lukas Jelonek authored 7 years ago
  
  a0fdafcd
- Add script to resolve dbxrefs for psot results · 3b7d874f
  Lukas Jelonek authored 7 years ago
  
  3b7d874f
- Add unit tests (fixes #38) · 19c938e1
  Lukas Jelonek authored 7 years ago
  
  19c938e1
- Fix bug: Analysis is executed even if no valid file is given (fixes #39) · 7ecd0ccd
  Lukas Jelonek authored 7 years ago
  
  Sem-Ver: bugfix
  7ecd0ccd
- Fix bug: TMHMM json output result key should hold a list (solves #32) · 60e4da60
  Lukas Jelonek authored 7 years ago
  
  Sem-Ver: bugfix
  60e4da60
- Add setup script. Move all resources to psot module · d32426b0
  Lukas Jelonek authored 7 years ago
  
  d32426b0
Jan 16, 2018
- Remove accidentally uploaded screenshot · 346fe67e
  Lukas Jelonek authored 7 years ago
  
  346fe67e
Dec 19, 2017
- Merge branch 'signalp-mature-option' into 'develop' · fe352f70
  Lukas Jelonek authored 7 years ago
  
  SignalP include_mature parameter See merge request psot!8
  fe352f70
Dec 13, 2017
- Prevent writing of empty string to json if mature lookup fails. · e626a12c
  hmueller authored 7 years ago
  
  e626a12c
- Include mature sequence in json output if available. · 4dda3c47
  hmueller authored 7 years ago
  
  4dda3c47
- Make signalp run script accept optional include_mature flag. · f72da30b
  hmueller authored 7 years ago
  
  f72da30b
Dec 12, 2017
- Merge branch 'fix-include-sequence' into 'develop' · 5e73cabf
  Lukas Jelonek authored 7 years ago
  
  Fix loss of last fasta entry. Solves #31 See merge request psot!7
  5e73cabf
- Merge branch 'tmhmm' into 'develop' · 639c784e
  Lukas Jelonek authored 7 years ago
  
  Tmhmm See merge request psot!5
  639c784e
- merge develop into tmhmm · c1d124d9
  lmueller authored 7 years ago
  
  c1d124d9
- added resolve_dbxrefs.py to nextflow.py (not working yet) · 458a3c11
  lmueller authored 7 years ago
  
  458a3c11
- Merge branch 'fasta-header-decomplexify' into 'develop' · 5a3cc5ad
  Lukas Jelonek authored 7 years ago
  
  Fasta header decomplexify See merge request psot!6
  5a3cc5ad
Dec 11, 2017
- added taxonomy dbxrefs to testfile · 57eb76c6
  lmueller authored 7 years ago
  
  57eb76c6
Dec 08, 2017
- Fix loss of last fasta entry. Solves #31 · 171d47d8
  hmueller authored 7 years ago
  
  171d47d8