Commits · 0f6e13798074f1940cb35775f0c7f8877b2097a4 · SOaAS / psot.repository · GitLab

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Apr 10, 2018
- Add documentation of results structure · 0f6e1379
  Lukas Jelonek authored 6 years ago
  
  0f6e1379
- Fix bug: run_blastp ignores evalue · 9be2aa3e
  Lukas Jelonek authored 6 years ago
  
  9be2aa3e
Apr 09, 2018
- Fix bug: information cannot be retrieved when no computations are available · a736ef30
  Lukas Jelonek authored 6 years ago
  
  a736ef30
Apr 05, 2018
- Minor changes on documentation · 44edd19b
  Lukas Jelonek authored 6 years ago
  
  44edd19b
- Add documentation on inclusion of own repositories · 8f177582
  Lukas Jelonek authored 6 years ago
  
  8f177582
Apr 04, 2018
- Update documentation · 8176e9cd
  Lukas Jelonek authored 6 years ago
  
  8176e9cd
- Fix bug: Exception when no repository is available · 0c33a710
  Lukas Jelonek authored 6 years ago
  
  0c33a710
Apr 03, 2018
- Fix bug: tools is not a dictionary when not defined in config.yaml · 2e5f8186
  Lukas Jelonek authored 6 years ago
  
  2e5f8186
- Remove commandline parameter for additional repositories · b3f128d5
  Lukas Jelonek authored 6 years ago
  
  b3f128d5
- Decouple default bcf psot profiles from psot · c1aafe51
  Lukas Jelonek authored 6 years ago
  
  c1aafe51
- Move repository parameter to main parser. Improve debug output · 158711ed
  Lukas Jelonek authored 6 years ago
  
  158711ed
Mar 08, 2018
- Add envelop to hmmer output, replace blast with ghostx in common profile · 7429e324
  Lukas Jelonek authored 7 years ago
  
  7429e324
Mar 07, 2018
- Fix bug: hmmer query start and end are same or similar · 3d4c8474
  Lukas Jelonek authored 7 years ago
  
  3d4c8474
- Fix bug: convert_targetp still has problems when installed in a virtualenv · 0ef7a504
  Lukas Jelonek authored 7 years ago
  
  0ef7a504
- Fix bug: Cluster execution does not work within a virtual environment · 8c34e904
  Lukas Jelonek authored 7 years ago
  
  8c34e904
- Update documentation · 708eebeb
  Lukas Jelonek authored 7 years ago
  
  708eebeb
Feb 07, 2018
- Implement support for accessing modules from other repositories in profiles · 8b448cb6
  Lukas Jelonek authored 7 years ago
  
  8b448cb6
- Fix bug: adapt targetp runner to new helpers path · 0a11c872
  Lukas Jelonek authored 7 years ago
  
  0a11c872
- Fix bug: adapt ghostx runner to new helpers path · 4f316a5c
  Lukas Jelonek authored 7 years ago
  
  4f316a5c
- Modify tests psot-repository that it can actually be executed with psot · fce52ed3
  Lukas Jelonek authored 7 years ago
  
  fce52ed3
- Moved helper scripts to own directory. Use absolute paths for scripts. · 78d90258
  Lukas Jelonek authored 7 years ago
  
  78d90258
Jan 31, 2018
- Add user interface integration for psot repositories via cli and environment variable · 67704550
  Lukas Jelonek authored 7 years ago
  
  67704550
- Merge branch 'tool-name-in-live-results' into 'develop' · 660a0d11
  Lukas Jelonek authored 7 years ago
  
  Replace uuid in live results with tool name (resolves #20). Closes #20 See merge request psot!9
  660a0d11
- Merge branch 'develop' of git.computational.bio.uni-giessen.de:SOaAS/psot into develop · 312d16fc
  Lukas Jelonek authored 7 years ago
  
  312d16fc
- Fix bug: retrieve information uses always the same name (fixes #45) · a7249505
  Lukas Jelonek authored 7 years ago
  
  a7249505
- Merge branch 'secure-tmpdir-removal' into 'develop' · 6c90be0e
  Lukas Jelonek authored 7 years ago
  
  Use pythons context manager to ensure temp dir removal in tests (resolves #44). Closes #44 See merge request psot!10
  6c90be0e
- Use pythons context manager to ensure temp dir removal in tests (resolves #44). · 8b138dd0
  hmueller authored 7 years ago
  
  8b138dd0
- Cleanup · 09d53eb3
  Lukas Jelonek authored 7 years ago
  
  09d53eb3
- Flatten documentation structure to a single directory · 196c6240
  Lukas Jelonek authored 7 years ago
  
  196c6240
- Update README.rst · a32f0cea
  Lukas Jelonek authored 7 years ago
  
  a32f0cea
- Merge remote-tracking branch 'origin/develop' into tool-name-in-live-results · 048e6207
  hmueller authored 7 years ago
  
  048e6207
- Update readme · 37d1acf3
  Lukas Jelonek authored 7 years ago
  
  37d1acf3
- Implement merge of multiple psot repositories · 278b28bc
  Lukas Jelonek authored 7 years ago
  
  278b28bc
- Replace uuid in live results with tool name (resolves #20). · 044a1df9
  hmueller authored 7 years ago
  
  044a1df9
Jan 30, 2018
- Add test methods for checking whether scripts for repository are resolved correctly. · c62b52a7
  Lukas Jelonek authored 7 years ago
  
  c62b52a7
- Refactor config into repository and application config. · 6cfc2cf4
  Lukas Jelonek authored 7 years ago
  
  6cfc2cf4
Jan 29, 2018
- Fix bug: replace default fasta file with concrete fasta file · c5e97033
  Lukas Jelonek authored 7 years ago
  
  c5e97033
Jan 24, 2018
- Add feature: dbxref lookup (closes #23) · dad7e862
  Lukas Jelonek authored 7 years ago
  
  Sem-Ver: feature
  dad7e862
- Replace single document handling with dictionary documents handling for dbxref resolver · a0fdafcd
  Lukas Jelonek authored 7 years ago
  
  a0fdafcd
- Add script to resolve dbxrefs for psot results · 3b7d874f
  Lukas Jelonek authored 7 years ago
  
  3b7d874f